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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15862665_15862737_F

Intron Information:

Intron Rank:
141752
Intron Class:
major
Intron Phase:
Intron Coordinates:
15862665 - 15862737
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
CATTTATTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGCCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
61.5
44.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.4
0.55
1
67.2
42.5
Minor 5ss
43.3
-0.7
2.9
55.3
48.9
Minor BPS
76.3
0.9
1.1
85.09
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026338
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029225
15861383 - 15868295
6913