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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1593965_1594493_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1593965 - 1594493
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTCTAAAT
Flanking Amino Acid:
MNKSGRLYGKKVCNEDCNFI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
80.5
33.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
74.5
0.55
0.9
70.3
34.8
Minor 5ss
41.9
-0.9
3.1
56.7
47.6
Minor BPS
60.9
0.42
1.8
83.05
37.5

Associated Gene:

Gene:
FGF7
Ensembl Gene ID:
ENSAPLG00000004328
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004449
1566301 - 1595045
28745