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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_15971833_15980721_R

Intron Information:

Intron Rank:
154982
Intron Class:
major
Intron Phase:
Intron Coordinates:
15971833 - 15980721
Intron Length:
8889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGACAA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTCTCCTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.2
61.7
38.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
88.1
0.86
0.6
81.5
30.4
Minor 5ss
33.7
-1.9
2.8
39.4
45.9
Minor BPS
48.6
-0
2.1
68.24
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030853
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024581
15971084 - 15981729
10646