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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16067199_16072775_F

Intron Information:

Intron Rank:
132245
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
16067199 - 16072775
Intron Length:
5577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCCAGA
5'SS Class:
weak_major
3'SS Sequence:
TTATCATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTTTCCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
61.5
44.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.7
0.65
0.9
73
36.1
Minor 5ss
51.4
0.05
2.2
66.8
44.2
Minor BPS
72
0.69
1.6
78.93
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021049
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019000
16066667 - 16084649
17983