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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16150068_16152273_R

Intron Information:

Intron Rank:
154468
Intron Class:
major
Intron Phase:
Intron Coordinates:
16150068 - 16152273
Intron Length:
2206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TCACTCGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TATCACATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
67.8
0.4
1
61.2
39.1
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
54
0.12
1.8
68.67
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030632
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029714
16149766 - 16153955
4190