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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16152334_16153312_R

Intron Information:

Intron Rank:
154469
Intron Class:
major
Intron Phase:
Intron Coordinates:
16152334 - 16153312
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATATA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
TTTGCTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
85.6
24.7
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
73.1
0.52
1
69.9
40.6
Minor 5ss
33.2
-1.9
2.9
41.8
44.8
Minor BPS
50
0.08
2
76.06
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030632
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029714
16149766 - 16153955
4190