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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16176613_16234812_R

Intron Information:

Intron Rank:
145515
Intron Class:
major
Intron Phase:
Intron Coordinates:
16176613 - 16234812
Intron Length:
58200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTCTCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.3
0.57
0.9
70.6
35
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
57.1
0.22
1.9
73.44
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025682
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043668
16176105 - 16235416
59312