About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1621187_1622038_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1621187 - 1622038
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
IPEYKEKRHEIALIFPGSNS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.4
0.73
0.8
82.3
28.5
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
DTWD1
Ensembl Gene ID:
ENSAPLG00000004237
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042643
1618045 - 1625527
7483
ENSAPLT00000004345
1618045 - 1626012
7968