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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1622313_1625297_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1622313 - 1625297
Intron Length:
2985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
NKIITDERLQGLLQVELKTR
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
83.8
0.76
0.8
81.8
28.7
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
DTWD1
Ensembl Gene ID:
ENSAPLG00000004237
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004345
1618045 - 1626012
7968