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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16239616_16246876_R

Intron Information:

Intron Rank:
143434
Intron Class:
major
Intron Phase:
Intron Coordinates:
16239616 - 16246876
Intron Length:
7261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTTTCTTTCTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.7
41.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
91.1
0.92
0.6
84.6
30.3
Minor 5ss
39.4
-1.2
2.9
52.3
44.3
Minor BPS
46.2
-0.2
3.6
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024476
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046159
16239028 - 16250342
11315