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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16247085_16249556_R

Intron Information:

Intron Rank:
143435
Intron Class:
major
Intron Phase:
Intron Coordinates:
16247085 - 16249556
Intron Length:
2472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
TTTGGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCATTAACATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
72.3
39.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
84.3
0.77
0.8
81
36.6
Minor 5ss
42.3
-0.9
3.4
56.3
47.9
Minor BPS
38.5
-0.7
2
54.74
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024476
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046159
16239028 - 16250342
11315