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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16255580_16265403_R

Intron Information:

Intron Rank:
150991
Intron Class:
major
Intron Phase:
Intron Coordinates:
16255580 - 16265403
Intron Length:
9824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
ATTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.5
36.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
88.5
0.87
0.7
85.9
27.9
Minor 5ss
41.4
-1
2.8
50.8
41.1
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028737
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042351
16254580 - 16267074
12495