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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16265459_16266796_R

Intron Information:

Intron Rank:
150988
Intron Class:
major
Intron Phase:
Intron Coordinates:
16265459 - 16266796
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.7
0.69
0.8
78.9
33.2
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
80.3
1.03
1
87.16
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028737
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042351
16254580 - 16267074
12495
ENSAPLT00000042065
16265231 - 16267579
2349