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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16265459_16267249_R

Intron Information:

Intron Rank:
150984
Intron Class:
major
Intron Phase:
Intron Coordinates:
16265459 - 16267249
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGA
5'SS Class:
major
3'SS Sequence:
TCTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.5
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.7
0.69
0.8
78.9
33.2
Minor 5ss
45.7
-0.5
2.5
59.1
45.3
Minor BPS
80.3
1.03
1
87.16
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028737
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024272
16265231 - 16274372
9142