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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16307318_16307755_R

Intron Information:

Intron Rank:
150987
Intron Class:
major
Intron Phase:
Intron Coordinates:
16307318 - 16307755
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTG
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTGATGGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
65.5
40.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
45.8
-0.4
3.2
63.6
48.1
Minor BPS
40.4
-0.6
2.2
61.32
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028737
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032520
16267152 - 16308092
40941