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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16320649_16321036_F

Intron Information:

Intron Rank:
128912
Intron Class:
major
Intron Phase:
Intron Coordinates:
16320649 - 16321036
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTATAAATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTACCTAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.7
0.44
1
60.6
44.4
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
65.8
0.48
1.8
75.06
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019357
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047652
16314285 - 16321281
6997