Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16380365_16384107_F

Intron Information:

Intron Rank:

146353

Intron Class:

major

Intron Phase:

Intron Coordinates:

16380365 - 16384107

Intron Length:

3743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTTC

5'SS Class:

strong_major

3'SS Sequence:

AATTCTTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAA

U12 Branch Point Sequence:

TTCTTCTTAGTG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.79

0.9

75.6

34.9

Major BPS

70.2

0.5

72.1

Major PPT

79.6

0.67

0.9

70.5

40.2

Minor 5ss

47.4

-0.3

3.1

66.9

44.7

Minor BPS

62.4

0.25

1.6

66.41

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028855

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033768

16380234 - 16385268

5035