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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16388473_16399132_R

Intron Information:

Intron Rank:
141272
Intron Class:
major
Intron Phase:
Intron Coordinates:
16388473 - 16399132
Intron Length:
10660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTACTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ACTTCATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.2
0.75
0.9
80.7
36.7
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
54.8
0.23
1.8
74.31
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023348
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046830
16387775 - 16399896
12122