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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_165184_165584_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
165184 - 165584
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTGCAATGATT
Flanking Amino Acid:
LHLKSVQACLAKTTEKKPTL
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.6
0.73
0.8
80.5
31.5
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
49.8
0.07
2
77.26
39.3

Associated Gene:

Gene:
DMXL2
Ensembl Gene ID:
ENSAPLG00000008330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022556
136006 - 191755
55750
ENSAPLT00000008801
136000 - 191755
55756
ENSAPLT00000038574
136000 - 191755
55756