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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16563494_16563616_R

Intron Information:

Intron Rank:
130286
Intron Class:
major
Intron Phase:
Intron Coordinates:
16563494 - 16563616
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAC
5'SS Class:
major
3'SS Sequence:
TCACTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TAATTTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.7
34.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.1
0.48
0.9
64.2
36.5
Minor 5ss
39.9
-1.1
2.8
51.9
44.9
Minor BPS
48
-0
2
70.11
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017305
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024463
16563107 - 16564631
1525