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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16766658_16768135_F

Intron Information:

Intron Rank:
132351
Intron Class:
major
Intron Phase:
Intron Coordinates:
16766658 - 16768135
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74
0.54
1
74.7
38.9
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
66.1
0.49
1.2
69.89
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021112
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018654
16765770 - 16768333
2564