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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16900890_16904051_R

Intron Information:

Intron Rank:
136369
Intron Class:
major
Intron Phase:
Intron Coordinates:
16900890 - 16904051
Intron Length:
3162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AAACCCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
CTTTATACAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
64.4
0.32
0.9
59.7
36.8
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
44.5
-0.5
2
53.26
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020780
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038887
16898784 - 16904069
5286