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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16932890_16933274_R

Intron Information:

Intron Rank:
133936
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
16932890 - 16933274
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CCACAAAAAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
44.8
-0.3
1.1
35.4
31.4
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019332
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020681
16932722 - 16936355
3634