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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_16933955_16936128_R

Intron Information:

Intron Rank:
133938
Intron Class:
major
Intron Phase:
Intron Coordinates:
16933955 - 16936128
Intron Length:
2174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGACTG
5'SS Class:
major
3'SS Sequence:
AATTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATCTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
62.5
43.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.4
0.75
0.8
82
34.8
Minor 5ss
28.7
-2.4
3.4
37.9
47
Minor BPS
65.5
0.56
1.5
77.97
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019332
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020681
16932722 - 16936355
3634