About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17099774_17101247_F

Intron Information:

Intron Rank:
132596
Intron Class:
major
Intron Phase:
Intron Coordinates:
17099774 - 17101247
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
81.3
0.7
0.7
77.1
25
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
62.9
0.4
2
79.52
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021251
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029620
17099474 - 17103276
3803