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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17235072_17236700_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17235072 - 17236700
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATAACTAAAAT
Flanking Amino Acid:
RQSLLREPRGGEESLVLSDG
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
84.5
30.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
48
-0
1.9
67.25
42.5

Associated Gene:

Gene:
ARRDC4
Ensembl Gene ID:
ENSAPLG00000010161
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010597
17234717 - 17242222
7506