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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17238710_17239401_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17238710 - 17239401
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTGAACT
Flanking Amino Acid:
AKIERKGYCNGEAIPIYAEI
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.3
0.55
1
78.2
34
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
66.5
0.6
1.6
84.58
35.3

Associated Gene:

Gene:
ARRDC4
Ensembl Gene ID:
ENSAPLG00000010161
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010597
17234717 - 17242222
7506