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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17240401_17240936_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17240401 - 17240936
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTAT
5'SS Class:
major
3'SS Sequence:
TCTTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TACTTCTAAATT
Flanking Amino Acid:
LALTLPEHPEAPPNYADVVS
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
75.6
36.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
43.9
-0.7
3.3
64.1
47.4
Minor BPS
62.9
0.48
1.7
76.1
41.2

Associated Gene:

Gene:
ARRDC4
Ensembl Gene ID:
ENSAPLG00000010161
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010597
17234717 - 17242222
7506