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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17241092_17241243_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17241092 - 17241243
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TAATTGTTGACA
Flanking Amino Acid:
RFQPPPLYSEVDPHPTDVEE
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
79.5
0.66
0.7
74.5
29.9
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
53.9
0.12
2.1
67.36
38.9

Associated Gene:

Gene:
ARRDC4
Ensembl Gene ID:
ENSAPLG00000010161
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010597
17234717 - 17242222
7506