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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17322260_17326512_R

Intron Information:

Intron Rank:
148545
Intron Class:
major
Intron Phase:
Intron Coordinates:
17322260 - 17326512
Intron Length:
4253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTCATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.5
0.69
0.8
74.8
33.5
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
62.8
0.48
1.6
76.98
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027325
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041449
17322025 - 17327660
5636