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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1736643_1737224_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1736643 - 1737224
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TGATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTATTTGATT
Flanking Amino Acid:
AMQAMFHSSLDSTEMVINMA
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
64.1
42.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
81.5
36
Minor 5ss
63
0.44
2.3
69.5
42.7
Minor BPS
64.3
0.53
1.5
79.36
37.3

Associated Gene:

Gene:
SPATA5L1
Ensembl Gene ID:
ENSAPLG00000004210
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004329
1734895 - 1741164
6270