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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1738119_1738550_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1738119 - 1738550
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
AATCCAAAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATGCATTAACA
Flanking Amino Acid:
VGDSEKILSQVFCQARASTP
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
49.6
-0
1
42.6
35.6
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
61.5
0.36
1.8
69.72
42.3

Associated Gene:

Gene:
SPATA5L1
Ensembl Gene ID:
ENSAPLG00000004210
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004329
1734895 - 1741164
6270