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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17383180_17384941_R

Intron Information:

Intron Rank:
135371
Intron Class:
major
Intron Phase:
Intron Coordinates:
17383180 - 17384941
Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTATATTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTCATATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77
0.61
0.9
68.9
41.4
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
52.8
0.08
1.6
61.55
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020246
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047246
17379996 - 17386976
6981
ENSAPLT00000032115
17379996 - 17385508
5513
ENSAPLT00000020327
17377293 - 17385038
7746