About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1738779_1739148_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1738779 - 1739148
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTACTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATCTCTTTACTC
Flanking Amino Acid:
CQELSDEERQLEFQETLNKD
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
80.9
0.7
0.8
80.6
30.3
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
61.4
0.34
1.6
67.85
38.7

Associated Gene:

Gene:
SPATA5L1
Ensembl Gene ID:
ENSAPLG00000004210
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004329
1734895 - 1741164
6270