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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1739284_1739994_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1739284 - 1739994
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTAT
5'SS Class:
major
3'SS Sequence:
TACCAACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCATTTAATA
Flanking Amino Acid:
VIYIPPPDLKGRLSILKICT
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
73.6
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.4
0.46
0.9
61.8
38.4
Minor 5ss
33
-1.9
3.3
46.5
48.8
Minor BPS
62.3
0.38
1.5
69.44
37.2

Associated Gene:

Gene:
SPATA5L1
Ensembl Gene ID:
ENSAPLG00000004210
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004329
1734895 - 1741164
6270