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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1740121_1740808_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1740121 - 1740808
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTTTCTAAAG
Flanking Amino Acid:
GADIENLCKEAALLALQENG
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.2
0.68
0.9
82.2
27.1
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
50.7
-0.1
1.8
60.47
41.7

Associated Gene:

Gene:
SPATA5L1
Ensembl Gene ID:
ENSAPLG00000004210
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004329
1734895 - 1741164
6270