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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17409924_17410917_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
17409924 - 17410917
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
ATTCTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATTCTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79
0.65
0.9
75.3
37.9
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
53.7
0.2
1.7
72.5
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010453
17409607 - 17449668
40062