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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17414740_17417121_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17414740 - 17417121
Intron Length:
2382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCATGATT
Flanking Amino Acid:
SCPISAAMYQVCQKFLQTYP
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
86.5
0.82
0.7
84.7
23.1
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
55.9
0.27
1.6
71.91
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010453
17409607 - 17449668
40062