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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17417305_17424183_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17417305 - 17424183
Intron Length:
6879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCCATG
Flanking Amino Acid:
AVAFYSVKMKGSLCDGTTSQ
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.3
0.73
0.9
76.5
37.3
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
48.4
-0.2
2
62.38
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010453
17409607 - 17449668
40062