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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17424359_17425956_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17424359 - 17425956
Intron Length:
1598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGTTCTCTAAG
Flanking Amino Acid:
ADPSRDGLISVQTFRERIVL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
73.8
42.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.8
0.56
1
79.5
32.9
Minor 5ss
36.4
-1.5
3.3
49.5
46.5
Minor BPS
46.4
-0.4
2
56.27
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010453
17409607 - 17449668
40062