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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17426043_17433070_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17426043 - 17433070
Intron Length:
7028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTGCAGTTAATG
Flanking Amino Acid:
LLTDPQDKETVLALYLNQCW
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1.1
81.9
31
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
84.7
0.78
0.7
80.8
31.2
Minor 5ss
31.5
-2.1
2.8
40.7
45.1
Minor BPS
47.3
-0.3
2.2
57.62
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010453
17409607 - 17449668
40062