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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1743012_1743686_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1743012 - 1743686
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGAATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCCATGATT
Flanking Amino Acid:
ETIDPTRPQKLLTIHQKWKP
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.2
0.57
1
66.8
43
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
74.6
0.85
1.5
92.34
29.6

Associated Gene:

Gene:
C15orf48
Ensembl Gene ID:
ENSAPLG00000017258
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024093
1741871 - 1743755
1885