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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17433171_17435968_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17433171 - 17435968
Intron Length:
2798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCC
5'SS Class:
major
3'SS Sequence:
GTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GCTTGTTTATTT
Flanking Amino Acid:
DVFSIPGREKVKLEDSCVCF
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.8
34.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.2
0.75
0.8
81.4
35.9
Minor 5ss
31.8
-2.1
3.3
43.1
44
Minor BPS
49.3
0.02
2
67.71
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010042
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010453
17409607 - 17449668
40062