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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17461637_17462152_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17461637 - 17462152
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TGGGAAAAAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCCTGTTATT
Flanking Amino Acid:
LKIWTTLQPLLTVHVGLASS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.3
37.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
48.4
-0
1.1
37.9
42.4
Minor 5ss
33.9
-1.8
2.9
44
38.5
Minor BPS
49
0.01
2.3
76.99
39.9

Associated Gene:

Gene:
PGPEP1L
Ensembl Gene ID:
ENSAPLG00000009905
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010303
17458165 - 17463547
5383