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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17462383_17463378_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17462383 - 17463378
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
CTTAATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGTTCTTAATA
Flanking Amino Acid:
IDIIFSRDAGRYICDYTYYA
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
78
0.63
0.9
74.1
39.8
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
80.8
0.96
1
82.55
32.7

Associated Gene:

Gene:
PGPEP1L
Ensembl Gene ID:
ENSAPLG00000009905
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010303
17458165 - 17463547
5383