About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17479094_17483470_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17479094 - 17483470
Intron Length:
4377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCTTTCTAAAGT
Flanking Amino Acid:
DGVFTTHSDVWSFGVVLWEI
Intron Amino Acid Position:
1197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
69.6
36.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
38.5
-1.3
2.9
45.8
43.6
Minor BPS
53.4
0.19
2
71.56
45.6

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548