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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17483601_17485851_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17483601 - 17485851
Intron Length:
2251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTACCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATTT
Flanking Amino Acid:
VAEDFTVKIGDFGMTRDIYE
Intron Amino Acid Position:
1154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
76.6
35
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.4
0.57
0.9
66.9
40.2
Minor 5ss
51.6
0.06
2.7
72.7
44.5
Minor BPS
63.8
0.51
1.8
83.73
37.1

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548