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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17486012_17487007_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17486012 - 17487007
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATCTTCTTAATC
Flanking Amino Acid:
YLRSLRPDTENNPGQTPPTL
Intron Amino Acid Position:
1101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.1
0.59
0.9
73.8
36.2
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
75.7
0.79
1.1
75.93
34.7

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548