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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17487119_17487406_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17487119 - 17487406
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCGAA
U12 Branch Point Sequence:
TGTATTCGAAGC
Flanking Amino Acid:
VMKEFNCHHVVRLLGVVSQG
Intron Amino Acid Position:
1064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
55.7
0.14
1.2
56.2
40.7
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
41.9
-0.6
1.9
52.98
38.3

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548