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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_17487637_17490411_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17487637 - 17490411
Intron Length:
2775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
TCTCTCCCCACA
Flanking Amino Acid:
VNPEYFSASDVYVPDEWEVP
Intron Amino Acid Position:
987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
42.6
-0.5
2.1
57.29
42

Associated Gene:

Gene:
IGF1R
Ensembl Gene ID:
ENSAPLG00000008504
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008953
17472570 - 17639117
166548